PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa24726s010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 68aa    MW: 7991.09 Da    PI: 9.9638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa24726s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.8e-19268163
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltk 63
                    f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tk
  Csa24726s010.1  2 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTK 68
                    89****************************66677899***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.26E-18168IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-14168No hitNo description
Gene3DG3DSA:2.40.330.101.7E-25168IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-16268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAERFFPL DSSSNEKGLL LNFEDLTGKS WRFRYSYWNS  60
SQSYVMTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-331681381DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044112e-86AC004411.3 Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence.
GenBankAC0053102e-86AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence.
GenBankAK1180452e-86AK118045.1 Arabidopsis thaliana At2g46870 mRNA for putative RAV-like B3 domain DNA binding protein, complete cds, clone: RAFL19-27-L04.
GenBankBT0085342e-86BT008534.1 Arabidopsis thaliana clone U50690 putative RAV B3 domain DNA binding protein (At2g46870) mRNA, complete cds.
GenBankCP0026852e-86CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankFJ8737312e-86FJ873731.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA1 (NGA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294618.11e-42hypothetical protein CARUB_v10023656mg
SwissprotO827991e-44NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLR0FXT01e-42R0FXT0_9BRAS; Uncharacterized protein
STRINGAT2G46870.13e-42(Arabidopsis thaliana)
STRINGfgenesh2_kg.181__3__AT2G46870.13e-42(Arabidopsis lyrata)
STRINGfgenesh2_kg.4__2914__AT2G46870.13e-42(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-46B3 family protein